Publications

2021

Saha, U, Gaine, R., Saha, P., Das, S and Das, B, (2021) The CTEXT complex plays a crucial role in targeting distinct sets of mRNAs by the nuclear exosome function in Saccharomyces cerevisiae bioRxiv. doi: https://doi.org/10.1101/2021.03.29.437469.

Chaudhuri, A., Das, S., Banerjea, M. and Das, B. (2021) Rrp6p/Rrp47p constitutes an independent nuclear turnover system of mature small non-coding RNAs in Saccharomyces cerevisiae bioRxiv. doi: https://doi.org/10.1101/2020.12.13.422512.

Singh, P., Chaudhuri, A, Banerjea, M., Marathe, N., and Das, B. (2021) Nrd1p identifies aberrant and natural exosomal target messages during the nuclear mRNA surveillance in Saccharomyces cerevisiae. Nucleic Acids Research, 49, 11512-11536, DOI: https://doi.org/10.1093/nar/gkab930..

2020

Chaudhuri, A., Das, S., and Das, B. (2020) The Role RNA cis-Elements in the intracellular trafficking,
transport, and localization of messenger RNAs in Saccharomyces cerevisiae WIREs RNA e1591, 1-37, DOI: https://doi.org/10.1002/wrna.1591

2019

Das, S., Biswas, S., Chaudhuri, S., Bhattacharya, A. and Das, B. (2019) A nuclear zip code in SKS1 mRNA promotes its slow export, nuclear retention and degradation by the Nuclear exosome/DRN in Saccharomyces cerevisiae. J. Mol. Biol., 431, 3626-3646, DOI: 10.1016/j.jmb.2019.07.005.I:

2018

Maity, J., Das, B., Bohr, V., and Karmakar, P. (2018) Acidic domain of WRNp is critical for autophagy and
up-regulates age associated proteins. DNA Repair, 68, 1-11, DOI: https://doi.org/10.1016/ j.dnarep.2018.05.003.

Singh, P., Saha, U., Paira, S. and Das, B. (2018) Nuclear mRNA Surveillance mechanisms: Function and links to human diseases. J. Mol. Biol, 430, 1993-2013, doi:10.1016/j.jmb.2018.05.009

Sarkar, D. Paira, S. and Das, B. (2018) Nuclear mRNA degradation tunes the gain of the unfolded protein response in Saccharomyces cerevisiae. Nucleic Acids Res., 46, 1139-1156, doi: 10.1093/nar/gkx1160

2016-17

Maity, A, Chaudhuri, A. and Das, B. (2016) DRN and TRAMP degrade specific and overlapping aberrant mRNAs formed at various stages of mRNP biogenesis in Saccharomyces cerevisiae. FEMS Yeast Research Sep 29. pii: fow088.

Das, S. and Das, B. (2016) eIF4G - An integrator of mRNA metabolism? FEMS Yeast Research Nov;16(7). pii: fow087.

Maity, A and Das, B. (2016) N6-methyl-adenosine modification in mRNA: Machinery, Function and Implications in health and diseases. FEBS J., 283, 1607-1630.

2014-15

Kabir, M. A. and Das, B. (2014) Fred Sherman (1932-2013). Current Science, 107, 704.

Das, S., Saha, U, and Das, B (2014) Cbc2p, Upf3p and eIF4G are components of DRN (Degradation of mRNA in the Nucleus) pathway in S. cerevisiae. FEMS Yeast Research, 14, 922-932.

2009-2014

Das, S., and Das, B. (2013) mRNA quality control pathways in Saccharomyces cerevisiae. J. Biosciences, 38, 615-640 (2017 SCI Impact factor: 1.42).

Das, B., Cash, M.N., Robinson, B., Kuhns, C. S., Latchney, L. R., Fallon, M. A, Elliott, R. W., Hand, A. R. and Culp D. J. (2013) The sld Genetic Defect: Two Intronic CA-Repeats Promote Insertion of the subsequent Intron and mRNA Decay. J. Biol. Chem., 288, 14742-14755. (2017 SCI Impact factor: 4.12).

Das, B., Cash, M.N., Hand, A.R., Shivazad, A., Grieshaber, S.S., Robinson, B., and Culp, D.J. (2010) Tissue Distribution of Murine Muc19/Smgc gene products. J. Histochem. Cytochem, 58, 141-156 (2017 SCI Impact factor: 2.51).

Das, B., Cash, M. N., Hand, A. R., Shivazad, A., and Culp, D. J. (2009) Expression of Muc19/Smgc Gene Products During Murine Sublingual Gland Development: Cytodifferentiation and Maturation of Salivary Mucous Cells J. Histochem. Cytochem., 57, 383-396 (2017 SCI Impact factor: 2.51).

2000-2009

Das, B., Das, S., and Sherman, F. (2006) Mutant lys2 mRNAs retained and degraded in the nucleus of Saccharomyces cerevisiae Proc. Natl. Acad. Sci. USA,103, 10871-10876.

Kuai, L., Das, B. and Sherman, F. (2005) A nuclear degradation pathway controls the abundance of normal mRNAs in Saccharomyces cerevisiae Proc. Natl. Acad. Sci. USA, 102, 13962-13967.

Gao, Q., Das, B., Sherman, F. and Maquat, L.E. (2005) Cap-binding protein 1-mediated and eukaryotic translation initiation factor 4E-mediated pioneer rounds of translation in yeast. Proc. Natl. Acad. Sci. USA, 102, 4258-4263.

Wang, Y-K., Das, B, Huber, D. H., Sherman, F. and Ruschenko, E. P. (2004) Role of the 14-3-3 protein in carbon metabolism of the pathogenic yeast Candida albicans. Yeast, 21, 685-702.

Das, B., Butler, J.S. and Sherman, F. (2003) Degradation of normal mRNA in the nucleus of yeast. Mol. Cell Biol., 23, 5502-5515.

Das, B., Guo, Z., Russo, P., Chartrand, P., and Sherman, F (2000). The Role of Nuclear Cap Binding Protein Cbc1p of Yeast in mRNA Termination and Degradation. Mol. Cell Biol., 20,. 2827-2838.

Polevoda, B., Martzen, M., Das, B., Phizicky, E.M., and Sherman, F. (2000) Cytochrome c methyl- transferase, Ctm1p of yeast. J. Biol. Chem., 275, 20508-20513.

1990-200

Pearce, D.A., Carr, C. J., Das, B. and Sherman, F. (1999). Phenotypic reversal of btn1 defects in yeast by chloroquine : A yeast model for batten disease. Proc. Natl. Acad. Sci. USA , 96, 11341-11345 .

Chakrabarti, A., Bera, A.K., Das, B., Chattopadhyay, C., Sarkar, D. and DasGupta, C. (1999)Binding and conformation of denatured horseradish peroxidase during E. coli ribosome mediated folding.Curr. Sci., 76, 1235-1238.

Pearce, D.A., Ferea, T., Nosel, S. A., Das, B. and Sherman, F (1999) DNA microarray analysis of strains lacking BTN1, the yeast. ortholog of the human Batten disease gene. Nature Genet., 23, 73-73.

Pearce, D.A., Ferea, T., Nosel, S. A., Das, B. and Sherman, F (1999) Action of BTN1, the yeast orthologue of the gene mutated in Batten disease. Nature Genet., 22, 55-58.

Chattopadhyay, S., Das, B., and DasGupta, C. (1996) Reactivation of denatured proteins by 23S ribosomal RNA: Role of domain V. Proc. Natl. Acad. Sci. USA, 93, 8284-8287.

Das, B., Chattopadhyay, S., Bera, A.K. and DasGupta, C. (1996). In vitro protein folding by ribosomes from Escherichia coli, wheat germ and rat liver: The role of 50S subunit and its 23S rRNA. Eur. J. Biochem., 235,613-62 1.

Bera A. K., Das, B., Chattopadhyay, S. and DasGupta, C. (1994). Refolding of denatured restriction endonucleases with ribosomal preparations from Methanosarcina barkeri. Biochem. Mol. Biol. International., 32, 315-323.

Chattopadhyay, S., Das, B., Bera, A. K. and DasGupta, C. (1994) Refolding of denatured lactate dehydrogenase by E. coli ribosome. Biochem. J. (London), 300, 717-721.

Bera, A. K., Das, B., Chattopadhyay, S. and DasGupta, C. (1994) Protein folding by ribosome and its RNA. Curr. Sci., 66, 230-232.

Das, B. and DasGupta, C. (1992) Reconstitution of denatured alkaline phosphatase with E. coli ribosome. Ind. J. Biochem. Biophys., 29, 512-515.

Das, B., Chattopadhyay, S. and DasGupta, C. (1992) Reactivation of denatured fungal glucose 6-phosphate dehydrogenase and E. coli alkaline phosphatase with E. coli ribosome. Biochem. Biophys. Res. Commun., 183, 774-780.

Maity, S., Das, B. and Mandal, N.C. (1991) Isolation and preliminary characterization of mutants of Escherichia coli resistant to lethal action of bacteriophage lambda P gene. Virology, 182, 351-352 .

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